Robotics Science and Systems
Berkeley, California, July 12, 2014
Full-day Workshop
Anticipated Schedule
Location: 206 Wheeler on the UC Berkeley Campus
8:00 - 9:00 am | Morning Coffee and Poster Setup |
9:00 - 9:05 am | Welcome and Introductions |
9:05 - 9:50 am |
Invited Talk:
Configuration Spaces of Symmetry-Constrained Motions in Crystals Greg Chirikjian |
9:50 - 10:10 am |
Collision-Free Configuration-Spaces in Macromolecular Crystals Gregory S. Chirikjian and Bernard Shiffman (Paper) |
10:05 - 10:30 am |
Editing molecular structures with smoothed articulated-body accelerations Stephane Redon (Paper) |
10:30 - 11:00 am | Coffee Break |
11:00 - 11:20 am |
On the Stochastic Roadmap to Model Functionally-related Structural Transitions in Wildtype and Variant Proteins Kevin Molloy, Rudy Clausen and Amarda Shehu (Paper) |
11:20 - 11:40 pm |
Adaptive Neighbor Connection Aids Protein Motion Modeling Chinwe Ekenna, Shawna Thomas and Nancy Amato (Paper) |
11:40 - 12:00 pm |
An Efficient Method for Quantitative Delineation of How Protein Breathing Motions Open Ligand Migration Channels Hyuntae Na and Guang Song (Paper) |
12:00 - 12:20 pm |
Geometric Issues in Dimensionality Reduction and Protein Conformation Space Mojie Duan, Li Han, Lee Rudolph and Shuanghong Huo (Paper) |
12:20 - 14:00 pm | Lunch Break (Group order and TVs for world cup match) |
14:00 - 14:30 pm |
Invited Talk:
Geometry and Robotics-inspired Methods for the Analysis of Protein Strcuture and Function Lydia Kavraki |
14:30 - 15:00 pm |
Motion Planning for Large Molecular Complexes Mark Moll |
15:00 - 15:15 pm |
Crowdsourced Molecular Docking Using Path-Planning and Haptic Devices Torin Adamson, John Baxter, Kasra Manavi, Bruna Jacobson and Lydia Tapia (Paper) |
15:15 - 15:20 pm |
Functional Annotation of Proteins Through Substructure Matching Mark Moll, Drew H. Bryant, and Lydia E. Kavraki (Poster Abstract) |
15:20 - 15:25 pm |
Effect of Geometry and Bacterial Collisions on the Motion of Micro Bio Robots Elizabeth Beattie, Edward Steager and Vijay Kumar (Poster Abstract) |
15:25 - 16:15 pm | Coffee Break and Posters |
Characterizing Synthetically Engineered Cells for Sensors in Micro Bio Robots Denise Wong, Edward B. Steager and Vijay Kumar (Poster Abstract) |
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Toward fully automated high performance computing drug discovery: A massively parallel virtual screening pipeline for docking and molecular mechanics/generalized born surface area rescoring to improve enrichment Xiaohua Zhang, Sergio Wong and Felice Lightstone (Poster Abstract) |
16:15 - 16:35 pm |
Influence of Model Resolution on Antibody Aggregation Simulations Kasra Manavi and Lydia Tapia (Paper) |
16:35 - 16:55 pm |
Improving Decoy Databases for Protein Folding Algorithms Aaron Lindsey, Hsin-Yi Yeh, Chih-Peng Wu, Shawna Thomas and Nancy Amato (Paper) |
16:55 - 17:15 pm |
Towards De Novo Folding of Protein Structures from Cryo-EM 3D Images at Medium Resolutions Jing He and Dong Si (Paper) |
17:15 - ?? pm | Discussion and Group Dinner |